NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM549507 Query DataSets for GSM549507
Status Public on Aug 11, 2010
Title WB-PSLE-7384
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 18
gender: Female
ethnicity: Asian
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -11.05506 0.9288538
ILMN_2055271 13.41513 0.07114624
ILMN_1736007 -1.367842 0.5032938
ILMN_2383229 -4.072651 0.6495389
ILMN_1806310 5.501171 0.2121212
ILMN_1779670 8.469132 0.1370224
ILMN_2321282 3.331441 0.284585
ILMN_1671474 6.614036 0.1818182
ILMN_1772582 -0.6676413 0.4716733
ILMN_1735698 0.0720952 0.4440053
ILMN_1653355 26.36237 0.0171278
ILMN_1717783 -2.304804 0.544137
ILMN_1705025 3.313556 0.28722
ILMN_1814316 -16.76241 0.9907773
ILMN_2359168 2.437433 0.3293808
ILMN_1731507 -14.56509 0.9776021
ILMN_1787689 -4.000235 0.6482214
ILMN_1745607 -12.35455 0.9565217
ILMN_2136495 8.251733 0.140975
ILMN_1668111 -12.37451 0.9565217

Total number of rows: 48803

Table truncated, full table size 1470 Kbytes.




Supplementary file Size Download File type/resource
GSM549507_4856076044_A_Raw.txt.gz 527.1 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap