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Sample GSM549488 Query DataSets for GSM549488
Status Public on Aug 11, 2010
Title WB-PSLE-8148
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 10
gender: Female
ethnicity: African American
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 7.175847 0.09881423
ILMN_2055271 10.85954 0.03820817
ILMN_1736007 -1.401498 0.5494071
ILMN_2383229 -1.996272 0.6007905
ILMN_1806310 3.474239 0.1949934
ILMN_1779670 0.07115743 0.4123847
ILMN_2321282 5.898366 0.1330698
ILMN_1671474 1.168715 0.3386034
ILMN_1772582 1.813717 0.3030303
ILMN_1735698 0.8572145 0.3557312
ILMN_1653355 17.63511 0.01581028
ILMN_1717783 4.467421 0.1554677
ILMN_1705025 2.312665 0.2516469
ILMN_1814316 -8.356582 0.9565217
ILMN_2359168 -2.838186 0.6719368
ILMN_1731507 -5.202691 0.8392622
ILMN_1787689 0.426222 0.3820817
ILMN_1745607 -9.007348 0.9710145
ILMN_2136495 -6.572195 0.9025033
ILMN_1668111 -3.032608 0.6930171

Total number of rows: 48803

Table truncated, full table size 1477 Kbytes.




Supplementary file Size Download File type/resource
GSM549488_4856050051_J_Raw.txt.gz 526.6 Kb (ftp)(http) TXT
Processed data included within Sample table

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