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Sample GSM549479 Query DataSets for GSM549479
Status Public on Aug 11, 2010
Title WB-PSLE-2925
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 14
gender: Female
ethnicity: Hispanic
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -1.934393 0.5507246
ILMN_2055271 6.831886 0.1449275
ILMN_1736007 8.613458 0.1014493
ILMN_2383229 1.795504 0.3306983
ILMN_1806310 12.27978 0.0513834
ILMN_1779670 6.149802 0.1699605
ILMN_2321282 6.791427 0.1449275
ILMN_1671474 5.376244 0.1897233
ILMN_1772582 -5.926142 0.7852437
ILMN_1735698 3.860496 0.2437418
ILMN_1653355 14.82141 0.03820817
ILMN_1717783 3.373234 0.2621871
ILMN_1705025 11.92094 0.05797102
ILMN_1814316 -11.28705 0.9591568
ILMN_2359168 -2.756539 0.6021081
ILMN_1731507 -2.29433 0.5731225
ILMN_1787689 -3.951925 0.6719368
ILMN_1745607 -1.234852 0.5072464
ILMN_2136495 4.644344 0.2081686
ILMN_1668111 -6.624109 0.8155468

Total number of rows: 48803

Table truncated, full table size 1515 Kbytes.




Supplementary file Size Download File type/resource
GSM549479_4856050050_E_Raw.txt.gz 533.8 Kb (ftp)(http) TXT
Processed data included within Sample table

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