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Sample GSM549477 Query DataSets for GSM549477
Status Public on Aug 11, 2010
Title WB-PSLE-9870
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 12
gender: Female
ethnicity: Hispanic
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -3.902695 0.7101449
ILMN_2055271 9.995808 0.06324111
ILMN_1736007 5.195227 0.1646904
ILMN_2383229 -3.801508 0.7061924
ILMN_1806310 -1.745461 0.5797101
ILMN_1779670 -1.622056 0.571805
ILMN_2321282 8.835844 0.07509881
ILMN_1671474 5.652523 0.1501976
ILMN_1772582 5.143128 0.1673254
ILMN_1735698 4.403264 0.2028985
ILMN_1653355 28.47048 0.009222661
ILMN_1717783 -7.590065 0.9038208
ILMN_1705025 -1.59715 0.5704875
ILMN_1814316 -4.734716 0.7720685
ILMN_2359168 3.462565 0.2516469
ILMN_1731507 -6.657969 0.8629776
ILMN_1787689 14.56972 0.02898551
ILMN_1745607 1.920054 0.3280632
ILMN_2136495 -1.699502 0.5744401
ILMN_1668111 -7.193532 0.884058

Total number of rows: 48803

Table truncated, full table size 1460 Kbytes.




Supplementary file Size Download File type/resource
GSM549477_4856050050_C_Raw.txt.gz 524.9 Kb (ftp)(http) TXT
Processed data included within Sample table

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