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Sample GSM549476 Query DataSets for GSM549476
Status Public on Aug 11, 2010
Title WB-PSLE-6156
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 18
gender: Female
ethnicity: Caucasian
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -1.20496 0.5362319
ILMN_2055271 15.41521 0.02898551
ILMN_1736007 -0.2154093 0.4743083
ILMN_2383229 -5.583025 0.7931489
ILMN_1806310 12.23858 0.04874835
ILMN_1779670 2.195875 0.3043478
ILMN_2321282 12.87141 0.03952569
ILMN_1671474 0.007921307 0.458498
ILMN_1772582 -2.806917 0.6442688
ILMN_1735698 5.577736 0.1699605
ILMN_1653355 21.23612 0.01449275
ILMN_1717783 -0.2675891 0.4782609
ILMN_1705025 -3.465743 0.6890646
ILMN_1814316 -4.682349 0.7496706
ILMN_2359168 0.9225658 0.397892
ILMN_1731507 -1.370806 0.5494071
ILMN_1787689 3.660614 0.2437418
ILMN_1745607 -0.6007285 0.5019763
ILMN_2136495 -3.243646 0.6693017
ILMN_1668111 -4.618905 0.7470356

Total number of rows: 48803

Table truncated, full table size 1495 Kbytes.




Supplementary file Size Download File type/resource
GSM549476_4856050050_B_Raw.txt.gz 529.4 Kb (ftp)(http) TXT
Processed data included within Sample table

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