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Sample GSM549475 Query DataSets for GSM549475
Status Public on Aug 11, 2010
Title WB-PSLE-5982
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 12
gender: Female
ethnicity: Hispanic
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -6.835298 0.8577075
ILMN_2055271 16.35869 0.03162055
ILMN_1736007 -2.129415 0.5810277
ILMN_2383229 1.090041 0.3517787
ILMN_1806310 12.21284 0.05533597
ILMN_1779670 11.29621 0.06192358
ILMN_2321282 3.690702 0.2345191
ILMN_1671474 13.89743 0.04611331
ILMN_1772582 -0.3209201 0.4479578
ILMN_1735698 5.823502 0.1607378
ILMN_1653355 15.62747 0.03689064
ILMN_1717783 -0.09119722 0.4321476
ILMN_1705025 4.091987 0.2173913
ILMN_1814316 1.003576 0.3623188
ILMN_2359168 -8.805739 0.9209486
ILMN_1731507 -7.623518 0.884058
ILMN_1787689 11.44289 0.06192358
ILMN_1745607 6.478659 0.140975
ILMN_2136495 4.616696 0.201581
ILMN_1668111 -5.233152 0.7878788

Total number of rows: 48803

Table truncated, full table size 1483 Kbytes.




Supplementary file Size Download File type/resource
GSM549475_4856050050_A_Raw.txt.gz 527.5 Kb (ftp)(http) TXT
Processed data included within Sample table

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