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Sample GSM549463 Query DataSets for GSM549463
Status Public on Aug 11, 2010
Title WB-Staph-9560
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 2
gender: Female
ethnicity: African American
illness: Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -3.155905 0.5823452
ILMN_2055271 8.216466 0.1238472
ILMN_1736007 -3.93897 0.6337286
ILMN_2383229 2.737977 0.2832675
ILMN_1806310 -11.44487 0.9604743
ILMN_1779670 -0.4409163 0.4374177
ILMN_2321282 3.886746 0.2424242
ILMN_1671474 0.2943266 0.3992095
ILMN_1772582 -2.065917 0.5085639
ILMN_1735698 3.961713 0.2371542
ILMN_1653355 12.19599 0.06455863
ILMN_1717783 -1.086165 0.4624506
ILMN_1705025 2.770167 0.2819499
ILMN_1814316 -5.711722 0.7628459
ILMN_2359168 -2.639823 0.5520422
ILMN_1731507 -2.478489 0.5388669
ILMN_1787689 2.588308 0.2885376
ILMN_1745607 -7.751318 0.8748353
ILMN_2136495 -6.054623 0.7865613
ILMN_1668111 -7.356836 0.85639

Total number of rows: 48803

Table truncated, full table size 1504 Kbytes.




Supplementary file Size Download File type/resource
GSM549463_4676163067_B_Raw.txt.gz 533.6 Kb (ftp)(http) TXT
Processed data included within Sample table

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