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Sample GSM549462 Query DataSets for GSM549462
Status Public on Aug 11, 2010
Title WB-Staph-9559
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 6
gender: Female
ethnicity: Hispanic
illness: Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -1.021566 0.4729908
ILMN_2055271 11.59151 0.06719368
ILMN_1736007 -7.439282 0.8787879
ILMN_2383229 -8.270407 0.9183136
ILMN_1806310 -4.686907 0.7259552
ILMN_1779670 -8.090954 0.9117259
ILMN_2321282 9.686448 0.08168643
ILMN_1671474 -5.798204 0.8050066
ILMN_1772582 2.980489 0.2674572
ILMN_1735698 0.6679462 0.3847167
ILMN_1653355 11.0279 0.06982872
ILMN_1717783 -6.331798 0.8221344
ILMN_1705025 0.9431115 0.370224
ILMN_1814316 -7.857003 0.8985507
ILMN_2359168 -5.928742 0.8063241
ILMN_1731507 0.9806486 0.3675889
ILMN_1787689 5.872446 0.1528327
ILMN_1745607 1.351206 0.3491436
ILMN_2136495 2.48642 0.28722
ILMN_1668111 -5.357667 0.7694334

Total number of rows: 48803

Table truncated, full table size 1480 Kbytes.




Supplementary file Size Download File type/resource
GSM549462_4676163067_A_Raw.txt.gz 530.3 Kb (ftp)(http) TXT
Processed data included within Sample table

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