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Sample GSM549451 Query DataSets for GSM549451
Status Public on Aug 11, 2010
Title WB-Staph-9598
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 10
gender: Female
ethnicity: Hispanic
illness: Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 6.055765 0.2094862
ILMN_2055271 3.565445 0.2766798
ILMN_1736007 -8.613167 0.8616601
ILMN_2383229 -0.5853815 0.4387352
ILMN_1806310 -9.808331 0.9038208
ILMN_1779670 -2.208977 0.5164691
ILMN_2321282 9.203319 0.140975
ILMN_1671474 -3.251353 0.5612648
ILMN_1772582 9.973444 0.1264822
ILMN_1735698 4.724868 0.2424242
ILMN_1653355 4.608203 0.2450593
ILMN_1717783 -16.268 0.9947299
ILMN_1705025 2.007776 0.3254282
ILMN_1814316 -10.75962 0.9249012
ILMN_2359168 -8.4409 0.8537549
ILMN_1731507 -0.9397139 0.4545455
ILMN_1787689 4.850783 0.2332016
ILMN_1745607 -4.470747 0.6284585
ILMN_2136495 -4.360218 0.6231884
ILMN_1668111 -6.940449 0.7760211

Total number of rows: 48803

Table truncated, full table size 1468 Kbytes.




Supplementary file Size Download File type/resource
GSM549451_4676163064_A_Raw.txt.gz 529.2 Kb (ftp)(http) TXT
Processed data included within Sample table

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