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Sample GSM549447 Query DataSets for GSM549447
Status Public on Aug 11, 2010
Title WB-Staph-2707
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 10
gender: Female
ethnicity: Caucasian
illness: Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 0.1160986 0.4440053
ILMN_2055271 22.12471 0.01317523
ILMN_1736007 -0.3565996 0.4874835
ILMN_2383229 -12.43911 0.9789196
ILMN_1806310 -1.164587 0.5309618
ILMN_1779670 -1.458056 0.5480896
ILMN_2321282 3.418037 0.2714097
ILMN_1671474 8.396409 0.1119895
ILMN_1772582 -5.261815 0.7470356
ILMN_1735698 6.30026 0.171278
ILMN_1653355 7.356402 0.1449275
ILMN_1717783 -5.948337 0.7931489
ILMN_1705025 2.501161 0.3043478
ILMN_1814316 -3.711742 0.6534914
ILMN_2359168 8.026554 0.1238472
ILMN_1731507 -8.855756 0.9038208
ILMN_1787689 10.91327 0.07641634
ILMN_1745607 -1.922089 0.5783926
ILMN_2136495 7.482184 0.140975
ILMN_1668111 -4.792708 0.7167326

Total number of rows: 48803

Table truncated, full table size 1502 Kbytes.




Supplementary file Size Download File type/resource
GSM549447_4676163060_H_Raw.txt.gz 530.2 Kb (ftp)(http) TXT
Processed data included within Sample table

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