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Sample GSM549436 Query DataSets for GSM549436
Status Public on Aug 11, 2010
Title WB-Strep-5808
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 5
gender: Female
ethnicity: Hispanic
illness: Strep
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -8.49897 0.9183136
ILMN_2055271 0.8871853 0.3873518
ILMN_1736007 2.679086 0.284585
ILMN_2383229 -2.22184 0.5928854
ILMN_1806310 1.535185 0.3491436
ILMN_1779670 -6.444175 0.8353096
ILMN_2321282 19.13127 0.01581028
ILMN_1671474 -1.0845 0.5111989
ILMN_1772582 5.297782 0.171278
ILMN_1735698 -0.2900242 0.4598155
ILMN_1653355 17.56388 0.02503294
ILMN_1717783 1.558455 0.3478261
ILMN_1705025 1.700173 0.3399209
ILMN_1814316 -9.550034 0.9486166
ILMN_2359168 -4.105873 0.7193676
ILMN_1731507 0.6986993 0.3992095
ILMN_1787689 1.937081 0.3320158
ILMN_1745607 -4.027585 0.7140975
ILMN_2136495 -0.1163697 0.4519104
ILMN_1668111 -3.285548 0.6587615

Total number of rows: 48803

Table truncated, full table size 1469 Kbytes.




Supplementary file Size Download File type/resource
GSM549436_4676163048_H_Raw.txt.gz 527.0 Kb (ftp)(http) TXT
Processed data included within Sample table

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