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Sample GSM549426 Query DataSets for GSM549426
Status Public on Aug 11, 2010
Title WB-Staph-1402
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 5
gender: Male
ethnicity: African American
illness: Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -6.430133 0.8682477
ILMN_2055271 11.64352 0.05665349
ILMN_1736007 1.995036 0.3175231
ILMN_2383229 -5.24138 0.7839262
ILMN_1806310 12.83095 0.04347826
ILMN_1779670 -0.4825743 0.4519104
ILMN_2321282 2.34982 0.2951252
ILMN_1671474 2.232738 0.3017128
ILMN_1772582 -1.219839 0.5059289
ILMN_1735698 3.373827 0.2411067
ILMN_1653355 21.89729 0.01449275
ILMN_1717783 -2.322429 0.5704875
ILMN_1705025 -3.865436 0.6877471
ILMN_1814316 -5.568526 0.8076416
ILMN_2359168 1.022648 0.3741766
ILMN_1731507 2.773126 0.2714097
ILMN_1787689 -0.1548833 0.4426877
ILMN_1745607 -6.511077 0.8735178
ILMN_2136495 -6.344748 0.8577075
ILMN_1668111 0.761376 0.3873518

Total number of rows: 48803

Table truncated, full table size 1466 Kbytes.




Supplementary file Size Download File type/resource
GSM549426_4676163047_E_Raw.txt.gz 527.7 Kb (ftp)(http) TXT
Processed data included within Sample table

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