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Sample GSM549421 Query DataSets for GSM549421
Status Public on Aug 11, 2010
Title WB-Staph-1340
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 6
gender: Female
ethnicity: Hispanic
illness: Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -8.375515 0.8774704
ILMN_2055271 4.859484 0.2226614
ILMN_1736007 0.251011 0.4202898
ILMN_2383229 -8.698381 0.8906456
ILMN_1806310 4.229542 0.2424242
ILMN_1779670 5.893871 0.1870883
ILMN_2321282 6.763418 0.1725955
ILMN_1671474 -1.774031 0.5296443
ILMN_1772582 -5.824879 0.770751
ILMN_1735698 -3.351559 0.6310936
ILMN_1653355 16.99624 0.03162055
ILMN_1717783 -8.066867 0.8642951
ILMN_1705025 -5.540883 0.7602108
ILMN_1814316 -7.348508 0.8405797
ILMN_2359168 -1.105641 0.4927536
ILMN_1731507 3.04148 0.2819499
ILMN_1787689 9.199274 0.1172596
ILMN_1745607 -6.414324 0.8023716
ILMN_2136495 -9.368344 0.9077734
ILMN_1668111 -3.757723 0.6587615

Total number of rows: 48803

Table truncated, full table size 1470 Kbytes.




Supplementary file Size Download File type/resource
GSM549421_4676163045_K_Raw.txt.gz 528.9 Kb (ftp)(http) TXT
Processed data included within Sample table

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