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Sample GSM549416 Query DataSets for GSM549416
Status Public on Aug 11, 2010
Title WB-PSLE-5952
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 13
gender: Male
ethnicity: Hispanic
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -0.1334022 0.4400527
ILMN_2055271 3.336601 0.2951252
ILMN_1736007 -1.747642 0.5046113
ILMN_2383229 -2.267483 0.5270092
ILMN_1806310 10.24751 0.1172596
ILMN_1779670 -12.10959 0.9578393
ILMN_2321282 12.35083 0.08036891
ILMN_1671474 2.02066 0.3544137
ILMN_1772582 9.459102 0.1304348
ILMN_1735698 8.654812 0.1501976
ILMN_1653355 3.279451 0.2951252
ILMN_1717783 -10.89007 0.9301713
ILMN_1705025 3.337358 0.2951252
ILMN_1814316 -2.040888 0.5177866
ILMN_2359168 1.241196 0.3847167
ILMN_1731507 9.123926 0.140975
ILMN_1787689 4.737501 0.2463768
ILMN_1745607 -9.667101 0.8880106
ILMN_2136495 -8.438035 0.8379447
ILMN_1668111 -12.77924 0.972332

Total number of rows: 48803

Table truncated, full table size 1478 Kbytes.




Supplementary file Size Download File type/resource
GSM549416_4493594564_B_Raw.txt.gz 527.4 Kb (ftp)(http) TXT
Processed data included within Sample table

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