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Sample GSM549415 Query DataSets for GSM549415
Status Public on Aug 11, 2010
Title WB-PSLE-5954
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 16
gender: Female
ethnicity: African American
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -6.352388 0.7061924
ILMN_2055271 3.155031 0.2779974
ILMN_1736007 -1.931063 0.4756258
ILMN_2383229 -7.65965 0.7747036
ILMN_1806310 2.518192 0.2924901
ILMN_1779670 -2.634915 0.5046113
ILMN_2321282 1.838324 0.3175231
ILMN_1671474 0.08243397 0.3873518
ILMN_1772582 -1.569623 0.4611331
ILMN_1735698 -2.447071 0.4927536
ILMN_1653355 12.36885 0.1027668
ILMN_1717783 -5.275705 0.6495389
ILMN_1705025 3.143595 0.2779974
ILMN_1814316 -9.87366 0.8735178
ILMN_2359168 3.527021 0.2635046
ILMN_1731507 -7.830758 0.7826087
ILMN_1787689 8.105194 0.1515152
ILMN_1745607 -8.48836 0.8181818
ILMN_2136495 -10.80196 0.9064559
ILMN_1668111 -9.735242 0.8695652

Total number of rows: 48803

Table truncated, full table size 1493 Kbytes.




Supplementary file Size Download File type/resource
GSM549415_4493594564_A_Raw.txt.gz 532.9 Kb (ftp)(http) TXT
Processed data included within Sample table

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