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Sample GSM549413 Query DataSets for GSM549413
Status Public on Aug 11, 2010
Title WB-PSLE-5615
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 17
gender: Female
ethnicity: Hispanic
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -8.596731 0.8194993
ILMN_2055271 10.7236 0.1225296
ILMN_1736007 7.281337 0.1831357
ILMN_2383229 -0.6819351 0.4044796
ILMN_1806310 -4.562314 0.6324111
ILMN_1779670 -2.217371 0.5032938
ILMN_2321282 2.201432 0.312253
ILMN_1671474 -1.66987 0.4729908
ILMN_1772582 5.314257 0.229249
ILMN_1735698 -3.395462 0.5678524
ILMN_1653355 13.86976 0.09222662
ILMN_1717783 7.486888 0.1805007
ILMN_1705025 -1.954522 0.4914361
ILMN_1814316 -7.346552 0.7667984
ILMN_2359168 -7.463835 0.770751
ILMN_1731507 -1.110957 0.4400527
ILMN_1787689 2.006734 0.3162055
ILMN_1745607 -9.781138 0.85639
ILMN_2136495 -5.35928 0.6679842
ILMN_1668111 -13.50185 0.9617918

Total number of rows: 48803

Table truncated, full table size 1485 Kbytes.




Supplementary file Size Download File type/resource
GSM549413_4493594553_I_Raw.txt.gz 530.4 Kb (ftp)(http) TXT
Processed data included within Sample table

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