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Sample GSM549406 Query DataSets for GSM549406
Status Public on Aug 11, 2010
Title WB-PSLE-7471
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 15
gender: Female
ethnicity: African American
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -8.937799 0.8339921
ILMN_2055271 18.1541 0.03293808
ILMN_1736007 1.724778 0.3557312
ILMN_2383229 3.841981 0.2806324
ILMN_1806310 16.16155 0.04347826
ILMN_1779670 -1.228469 0.4729908
ILMN_2321282 5.916173 0.2081686
ILMN_1671474 3.488536 0.2938077
ILMN_1772582 2.012243 0.3465086
ILMN_1735698 0.4174894 0.4084322
ILMN_1653355 25.65499 0.01581028
ILMN_1717783 -9.564291 0.8642951
ILMN_1705025 1.503193 0.3662714
ILMN_1814316 -7.929852 0.7905138
ILMN_2359168 -2.669341 0.5335968
ILMN_1731507 -1.814837 0.4993412
ILMN_1787689 11.23762 0.08695652
ILMN_1745607 -11.15138 0.9130435
ILMN_2136495 -10.55467 0.8945981
ILMN_1668111 -18.15972 0.9947299

Total number of rows: 48803

Table truncated, full table size 1528 Kbytes.




Supplementary file Size Download File type/resource
GSM549406_4493594553_B_Raw.txt.gz 534.4 Kb (ftp)(http) TXT
Processed data included within Sample table

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