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Sample GSM549404 Query DataSets for GSM549404
Status Public on Aug 11, 2010
Title WB-PSLE-5945
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 14
gender: Male
ethnicity: Hispanic
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -13.73982 0.9565217
ILMN_2055271 20.87734 0.0342556
ILMN_1736007 18.10271 0.0513834
ILMN_2383229 -10.71379 0.8985507
ILMN_1806310 -2.383132 0.5217391
ILMN_1779670 9.013098 0.1581028
ILMN_2321282 25.00379 0.02635046
ILMN_1671474 -4.267811 0.6310936
ILMN_1772582 -2.814232 0.5480896
ILMN_1735698 8.022428 0.1673254
ILMN_1653355 8.121887 0.1673254
ILMN_1717783 -6.81612 0.7641634
ILMN_1705025 6.212115 0.2002635
ILMN_1814316 0.7544031 0.3781291
ILMN_2359168 10.57015 0.1198946
ILMN_1731507 -5.620981 0.6996047
ILMN_1787689 -5.545287 0.6930171
ILMN_1745607 -10.13068 0.8880106
ILMN_2136495 -2.229527 0.513834
ILMN_1668111 -7.688265 0.8036891

Total number of rows: 48803

Table truncated, full table size 1477 Kbytes.




Supplementary file Size Download File type/resource
GSM549404_4493594552_J_Raw.txt.gz 527.8 Kb (ftp)(http) TXT
Processed data included within Sample table

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