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Sample GSM549400 Query DataSets for GSM549400
Status Public on Aug 11, 2010
Title WB-PSLE-5933
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 14
gender: Male
ethnicity: Hispanic
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -5.726958 0.6627141
ILMN_2055271 19.21956 0.07378129
ILMN_1736007 1.442229 0.3636364
ILMN_2383229 0.2585975 0.4018445
ILMN_1806310 -4.205899 0.599473
ILMN_1779670 -3.516326 0.5559947
ILMN_2321282 6.969037 0.2147563
ILMN_1671474 -5.795666 0.6693017
ILMN_1772582 20.45674 0.06192358
ILMN_1735698 2.113947 0.3372859
ILMN_1653355 26.11018 0.03689064
ILMN_1717783 -8.024236 0.7773386
ILMN_1705025 -3.521728 0.5573123
ILMN_1814316 -5.35659 0.6442688
ILMN_2359168 -4.795702 0.6231884
ILMN_1731507 -6.974117 0.7220026
ILMN_1787689 5.552963 0.2476943
ILMN_1745607 -5.391023 0.6482214
ILMN_2136495 -5.592567 0.6600791
ILMN_1668111 -11.27228 0.8682477

Total number of rows: 48803

Table truncated, full table size 1462 Kbytes.




Supplementary file Size Download File type/resource
GSM549400_4493594552_F_Raw.txt.gz 526.0 Kb (ftp)(http) TXT
Processed data included within Sample table

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