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Sample GSM549397 Query DataSets for GSM549397
Status Public on Aug 11, 2010
Title WB-PSLE-5612
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 15
gender: Female
ethnicity: African American
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -5.677051 0.6469038
ILMN_2055271 3.911362 0.2727273
ILMN_1736007 -1.032664 0.4479578
ILMN_2383229 -20.35961 0.9934124
ILMN_1806310 -0.9005545 0.4400527
ILMN_1779670 -0.1067799 0.4057971
ILMN_2321282 18.35283 0.05270092
ILMN_1671474 -5.305232 0.627141
ILMN_1772582 -5.712845 0.6469038
ILMN_1735698 0.5452541 0.3886693
ILMN_1653355 24.77094 0.02898551
ILMN_1717783 -4.500205 0.5902503
ILMN_1705025 -2.200965 0.4993412
ILMN_1814316 -15.14667 0.9578393
ILMN_2359168 -1.977997 0.4874835
ILMN_1731507 -2.365329 0.5046113
ILMN_1787689 22.64937 0.03689064
ILMN_1745607 -6.530949 0.6864295
ILMN_2136495 0.6118262 0.3833992
ILMN_1668111 -10.48253 0.8392622

Total number of rows: 48803

Table truncated, full table size 1504 Kbytes.




Supplementary file Size Download File type/resource
GSM549397_4493594552_C_Raw.txt.gz 534.0 Kb (ftp)(http) TXT
Processed data included within Sample table

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