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Sample GSM549389 Query DataSets for GSM549389
Status Public on Aug 11, 2010
Title WB-PSLE-5970
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 15
gender: Female
ethnicity: Hispanic
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -0.7356049 0.4202898
ILMN_2055271 14.55396 0.0685112
ILMN_1736007 0.7513248 0.3478261
ILMN_2383229 -8.511644 0.8590251
ILMN_1806310 5.168825 0.2121212
ILMN_1779670 -3.943845 0.6086956
ILMN_2321282 13.51297 0.07509881
ILMN_1671474 -2.502859 0.5204216
ILMN_1772582 4.060798 0.2397892
ILMN_1735698 2.051221 0.3003953
ILMN_1653355 11.58609 0.08827405
ILMN_1717783 -4.955848 0.6706192
ILMN_1705025 -0.1464944 0.3807642
ILMN_1814316 -5.83392 0.7167326
ILMN_2359168 2.41908 0.2938077
ILMN_1731507 -8.812753 0.8682477
ILMN_1787689 3.581553 0.256917
ILMN_1745607 -7.354284 0.8036891
ILMN_2136495 -9.240956 0.8814229
ILMN_1668111 -2.023679 0.4993412

Total number of rows: 48803

Table truncated, full table size 1501 Kbytes.




Supplementary file Size Download File type/resource
GSM549389_4493594520_E_Raw.txt.gz 531.1 Kb (ftp)(http) TXT
Processed data included within Sample table

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