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Sample GSM549388 Query DataSets for GSM549388
Status Public on Aug 11, 2010
Title WB-PSLE-5949
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 13
gender: Female
ethnicity: Caucasian
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -8.696192 0.8445323
ILMN_2055271 15.45647 0.06719368
ILMN_1736007 6.098568 0.2081686
ILMN_2383229 -16.30817 0.9907773
ILMN_1806310 -6.074483 0.6969697
ILMN_1779670 6.780861 0.1910408
ILMN_2321282 1.738981 0.3267457
ILMN_1671474 -10.19553 0.8959157
ILMN_1772582 5.262451 0.229249
ILMN_1735698 0.9050709 0.3689065
ILMN_1653355 14.87909 0.0685112
ILMN_1717783 -0.9253851 0.4519104
ILMN_1705025 -6.727922 0.7312253
ILMN_1814316 -8.957003 0.8511199
ILMN_2359168 -9.436026 0.8682477
ILMN_1731507 1.643812 0.3293808
ILMN_1787689 1.64717 0.3293808
ILMN_1745607 -10.01981 0.8919631
ILMN_2136495 -3.07771 0.5494071
ILMN_1668111 -8.5176 0.8313571

Total number of rows: 48803

Table truncated, full table size 1489 Kbytes.




Supplementary file Size Download File type/resource
GSM549388_4493594520_C_Raw.txt.gz 530.6 Kb (ftp)(http) TXT
Processed data included within Sample table

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