NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM549375 Query DataSets for GSM549375
Status Public on Aug 11, 2010
Title WB-ASLE-6647
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 50
gender: Female
ethnicity: Caucasian
illness: ASLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 2.823589 0.3043478
ILMN_2055271 8.55651 0.1475626
ILMN_1736007 10.20614 0.1172596
ILMN_2383229 -9.766373 0.8919631
ILMN_1806310 11.404 0.0974967
ILMN_1779670 1.574844 0.3438735
ILMN_2321282 0.4589429 0.397892
ILMN_1671474 4.959539 0.2345191
ILMN_1772582 3.220754 0.2938077
ILMN_1735698 14.65896 0.0685112
ILMN_1653355 10.58101 0.1106719
ILMN_1717783 -6.69692 0.7694334
ILMN_1705025 -1.009713 0.4598155
ILMN_1814316 -13.59713 0.9736496
ILMN_2359168 -3.927721 0.6245059
ILMN_1731507 -2.923776 0.5599473
ILMN_1787689 11.35675 0.0974967
ILMN_1745607 -0.9739749 0.458498
ILMN_2136495 -13.34836 0.9710145
ILMN_1668111 -5.514883 0.7061924

Total number of rows: 48803

Table truncated, full table size 1486 Kbytes.




Supplementary file Size Download File type/resource
GSM549375_4487653182_E_Raw.txt.gz 530.6 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap