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Sample GSM549338 Query DataSets for GSM549338
Status Public on Aug 11, 2010
Title WB-Still-2166
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 29
gender: Female
ethnicity: Caucasian
illness: Still
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1809034 65.60484 0.002635046
ILMN_1660305 83.61636 0.002635046
ILMN_1792173 153.0687 0
ILMN_1762337 -0.2104398 0.4295125
ILMN_2055271 27.7696 0.02108037
ILMN_1736007 6.818395 0.168643
ILMN_1814316 -3.081713 0.5889328
ILMN_2359168 -3.298478 0.6047431
ILMN_1731507 -8.752145 0.8405797
ILMN_1787689 11.51538 0.08695652
ILMN_1745607 -4.727194 0.6745718
ILMN_2136495 4.078799 0.256917
ILMN_1668111 -0.2342366 0.4295125
ILMN_2295559 -4.670693 0.6719368
ILMN_1735045 -4.483517 0.6627141
ILMN_1680754 4.402486 0.2476943
ILMN_2375184 7.466646 0.1541502
ILMN_1659452 9.616647 0.113307
ILMN_1767388 13.49801 0.07246377
ILMN_1675204 -8.32495 0.8300395

Total number of rows: 48803

Table truncated, full table size 1487 Kbytes.




Supplementary file Size Download File type/resource
GSM549338_4424548045_H_Raw.txt.gz 525.1 Kb (ftp)(http) TXT
Processed data included within Sample table

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