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Sample GSM517273 Query DataSets for GSM517273
Status Public on Feb 17, 2011
Title NY44
Sample type RNA
 
Source name Human hepatocellular carcinoma
Organism Homo sapiens
Characteristics vascular invasion: NA
code: transplant
class: Inflammation
tp53 mutation: 0
immunohistochemistry: pAkt : 1
immunohistochemistry: CTNNB1 : 1
used for prognostic prediction: no
used for microrna profiling: Yes
microRNA-based subclass: B
Extracted molecule total RNA
Extraction protocol Using fresh frozen HCC tissues, total RNA was extracted using TRIzol (Invitrogen).
Label Biotin
Label protocol Described in Nature 2005 Jun 9;435(7043):834-8. PMID: 15944708
 
Hybridization protocol Described in Nature 2005 Jun 9;435(7043):834-8. PMID: 15944708
Scan protocol Described in Nature 2005 Jun 9;435(7043):834-8. PMID: 15944708
Description NY44
Data processing After subtracting background signal intensities, data were normalized by median scaling, then a floor value of 20 was applied.
 
Submission date Mar 02, 2010
Last update date May 04, 2011
Contact name Yujin Hoshida
Organization name University of Texas Southwestern Medical Center
Street address 5323 Harry Hines Blvd
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Platform ID GPL10122
Series (2)
GSE20594 microRNA profiling of human hepatocellular carcinoma
GSE20596 MicroRNA-Based Classification of Hepatocellular Carcinoma and Oncogenic Role of miR-517a

Data table header descriptions
ID_REF
VALUE Normalized signal intensities

Data table
ID_REF VALUE
EAM312 20
EAM186 3082.75
EAM190 2831.225
JLA138 2664.275
EAM316 20
EAM403 505.725
JLA199 20
EAM317 1063.975
EAM318 52.8
JLA148 175.175
EAM319 20
JLA124 319.3
JLA198 76.575
JLA146 266.8
EAM300 73.55
EAM301 35.5
EAM235 55.9
JLA195 59.225
JLA139 20
JLA140 20

Total number of rows: 358

Table truncated, full table size 4 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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