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Sample GSM517199 Query DataSets for GSM517199
Status Public on Feb 17, 2011
Title B33
Sample type RNA
 
Source name Human hepatocellular carcinoma
Organism Homo sapiens
Characteristics vascular invasion: No
bclc_staging: A
age: 68
Sex: M
code: resection
class: Unannotated
afp: 4
tp53 mutation: 0
ctnnb1 mutation: 0
immunohistochemistry: pRPS6 : 0
immunohistochemistry: pIGFR1 : 0
immunohistochemistry: pAkt : 0
immunohistochemistry: CTNNB1 : 0
used for prognostic prediction: yes
used for microrna profiling: Yes
microRNA-based subclass: B
Extracted molecule total RNA
Extraction protocol Using fresh frozen HCC tissues, total RNA was extracted using TRIzol (Invitrogen).
Label Biotin
Label protocol Described in Nature 2005 Jun 9;435(7043):834-8. PMID: 15944708
 
Hybridization protocol Described in Nature 2005 Jun 9;435(7043):834-8. PMID: 15944708
Scan protocol Described in Nature 2005 Jun 9;435(7043):834-8. PMID: 15944708
Description B33
Data processing After subtracting background signal intensities, data were normalized by median scaling, then a floor value of 20 was applied.
 
Submission date Mar 02, 2010
Last update date May 04, 2011
Contact name Yujin Hoshida
Organization name University of Texas Southwestern Medical Center
Street address 5323 Harry Hines Blvd
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Platform ID GPL10122
Series (2)
GSE20594 microRNA profiling of human hepatocellular carcinoma
GSE20596 MicroRNA-Based Classification of Hepatocellular Carcinoma and Oncogenic Role of miR-517a

Data table header descriptions
ID_REF
VALUE Normalized signal intensities

Data table
ID_REF VALUE
EAM312 20
EAM186 3960.25
EAM190 3221.225
JLA138 3561.775
EAM316 20
EAM403 552.725
JLA199 29.025
EAM317 1520.975
EAM318 37.3
JLA148 138.175
EAM319 20
JLA124 300.8
JLA198 56.075
JLA146 136.8
EAM300 87.05
EAM301 33
EAM235 77.4
JLA195 33.225
JLA139 20.25
JLA140 20

Total number of rows: 358

Table truncated, full table size 4 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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