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Sample GSM499228 Query DataSets for GSM499228
Status Public on Feb 17, 2011
Title P_NY228
Sample type RNA
 
Source name Human hepatocellular carcinoma
Organism Homo sapiens
Characteristics tissue: hepatocellular carcinoma
vascular invasion: N/A
used for qpcr of microrna in chr19q13.41: Yes
Extracted molecule total RNA
Extraction protocol Using formalin-fixed, paraffin-embedded HCC tissues, total RNA was extracted using TRIzol (Invitrogen).
Label Cy5
Label protocol Refer to the Illumina beadarray Assay System Manual
 
Hybridization protocol Refer to the Illumina beadarray Assay System Manual
Scan protocol Refer to the Illumina beadarray Assay System Manual
Description none
Data processing For each probe, replicate mesurements were averaged after removing outliers. After subtracting background signal intensities, data were then normalized using the cubic spline algorithm.
 
Submission date Jan 20, 2010
Last update date Feb 17, 2011
Contact name Yujin Hoshida
Organization name University of Texas Southwestern Medical Center
Street address 5323 Harry Hines Blvd
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Platform ID GPL8432
Series (3)
GSE19977 Gene-expression profiles of formalin-fixed, paraffin-embedded human hepatocellular carcinoma
GSE20140 Combining Clinical, Pathology, and Gene Expression Data to Predict Recurrence of Hepatocellular Carcinoma
GSE20596 MicroRNA-Based Classification of Hepatocellular Carcinoma and Oncogenic Role of miR-517a

Data table header descriptions
ID_REF
VALUE Normalized signal intensities by BeadStudio software (Illumina)

Data table
ID_REF VALUE
ILMN_1809034 12445.13
ILMN_1660305 4953.902
ILMN_1762337 1749.632
ILMN_2055271 831.0486
ILMN_1814316 3695.516
ILMN_2359168 3454.417
ILMN_1731507 16.47482
ILMN_1787689 225.5765
ILMN_1745607 15437.83
ILMN_2136495 64.57352
ILMN_1668111 379.5984
ILMN_2295559 405.3222
ILMN_1735045 4597.62
ILMN_1680754 143.9093
ILMN_2375184 833.2129
ILMN_1659452 785.303
ILMN_1767388 231.1018
ILMN_1675204 351.7408
ILMN_1673870 393.1604
ILMN_1755321 2481.319

Total number of rows: 24526

Table truncated, full table size 524 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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