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Sample GSM49907 Query DataSets for GSM49907
Status Public on Dec 13, 2006
Title 01.ssp.testis
Sample type RNA
 
Channel 1
Source name C57BL6 testis (pool of 9 individuals)
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Mus musculus ssp testis
Organism Mus musculus
Extracted molecule total RNA
 
 
Description gene expression in house mice, expression divergence in house mice in 3 tissues (brain, liver/kidney, testis)
 
Submission date Apr 29, 2005
Last update date Dec 13, 2006
Contact name Christian Robert Voolstra
E-mail(s) [email protected]
URL http://faculty.kaust.edu.sa/sites/christianvoolstra/Pages/home.aspx
Organization name King Abdullah University of Science and Technology
Street address Red Sea Research Center
City Thuwal
ZIP/Postal code 23955
Country Saudi Arabia
 
Platform ID GPL1942
Series (1)
GSE2597 Contrasting patterns of expression divergence in early and late stages of population divergence in mice

Data table header descriptions
ID_REF
IA intensity for alexa dye555 (cy3) reference channel
IB intensity for alexa dye647 (cy5) sample channel
VALUE normalized (lowess print-tip sd regularization print-tip) log2 ratio (IB / IA)
FlagA Flag for Channel A (A/B/C=good,X/Y/Z=bad)
FlagB Flag for Channel B (A/B/C=good,X/Y/Z=bad)

Data table
ID_REF IA IB VALUE FlagA FlagB
1 51592 57349 0.152620955 X B
2 48840 54863 0.167770313 X X
3 62214 63970 0.040156217 B B
4 65654 72436 0.141823971 B B
5 46268 52468 0.18142306 X X
6 44014 50986 0.212138669 X X
7 65942 84918 0.364872749 B B
8 53050 60766 0.195911577 X B
9 106686 99684 -0.097937004 B B
10 100366 90620 -0.147369229 B B
11 54902 58304 0.086736159 X B
12 51520 47429 -0.119363143 X X
13 50294 53497 0.089071692 X B
14 43704 43951 0.008130663 X X
15 54282 51486 -0.076293687 X X
16 15050 14695 -0.034438128 X X
17 49124 51330 0.063374221 X X
18 47406 47538 0.004011541 X X
19 43776 38449 -0.187194059 X X
20 41734 40781 -0.03332605 X X

Total number of rows: 46128

Table truncated, full table size 1521 Kbytes.




Supplementary data files not provided
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