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GEO accession:
Sample GSM49828
Query DataSets for GSM49828
Status
Public on Dec 13, 2006
Title
03.cas.testis
Sample type
RNA
Channel 1
Source name
C57BL6 testis (pool of 9 individuals)
Organism
Mus musculus
Extracted molecule
total RNA
Channel 2
Source name
Mus musculus castaneus testis
Organism
Mus musculus
Extracted molecule
total RNA
Description
gene expression in house mice, expression divergence in house mice in 3 tissues (brain, liver/kidney, testis)
Submission date
Apr 28, 2005
Last update date
Dec 13, 2006
Contact name
Christian Robert Voolstra
E-mail(s)
[email protected]
URL
http://faculty.kaust.edu.sa/sites/christianvoolstra/Pages/home.aspx
Organization name
King Abdullah University of Science and Technology
Street address
Red Sea Research Center
City
Thuwal
ZIP/Postal code
23955
Country
Saudi Arabia
Platform ID
GPL1942
Series (1)
GSE2597
Contrasting patterns of expression divergence in early and late stages of population divergence in mice
Data table header descriptions
ID_REF
IA
intensity for alexa dye555 (cy3) reference channel
IB
intensity for alexa dye647 (cy5) sample channel
VALUE
normalized (lowess print-tip sd regularization print-tip) log2 ratio (IB / IA)
FlagA
Flag for Channel A (A/B/C=good,X/Y/Z=bad)
FlagB
Flag for Channel B (A/B/C=good,X/Y/Z=bad)
Data table
ID_REF
IA
IB
VALUE
FlagA
FlagB
1
93184
103007
0.144588216
C
C
2
0
0
null
Z
Z
3
72512
75843
0.064796265
C
C
4
78030
82669
0.083317535
C
C
5
77596
83711
0.109434927
X
X
6
64224
64141
-0.001865675
X
X
7
81754
80000
-0.031289319
B
B
8
83244
85241
0.034201228
B
B
9
133384
131435
-0.021236115
C
C
10
135322
126741
-0.094513101
C
C
11
78230
78246
0.000295037
B
B
12
78740
84450
0.101000711
B
X
13
83512
85654
0.036537105
B
B
14
78732
85672
0.121873641
B
B
15
88384
99049
0.164357185
X
X
16
82972
85633
0.045542307
X
X
17
94806
106395
0.166380082
X
X
18
82190
86018
0.065675715
B
B
19
78880
81539
0.047830712
B
B
20
66720
71294
0.095661378
B
B
Total number of rows:
46128
Table truncated, full table size
1510 Kbytes
.
Supplementary data files not provided
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