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Sample GSM485220 Query DataSets for GSM485220
Status Public on Oct 02, 2010
Title BM-MSC_rep 1
Sample type RNA
 
Source name BM-MSC from patient
Organism Homo sapiens
Characteristics cell type: BM-MSC
Extracted molecule total RNA
Extraction protocol All human MSCs used for experiment were cultured in the MesenCultTM medium in the presence of 5% CO2, or in Dulbecco's modified Eagle's medium DMEM supplemented with 10% fetal bovine serum . For BM-MSCs isolation, the mononuclear fraction of bone marrow was isolated by Histopaque-1077 gradient (1077-1; Sigma, USA), and plated in culture medium. Non-adherent cells were abandoned on next day
Total RNA were extracted by RNeasy mini kit (Cat. 74106; Qiagen, Hilden, Germany), and 100 ng to 1 ug of total RNA were subjected into reverse transcription using the SuperScriptTM III Reverse transcriptase kit (Invitrogen) as directed by the manufacturer.
Label Biotin
Label protocol standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description BM-MSC from patient
Data processing RMA through R based affy module
 
Submission date Dec 14, 2009
Last update date Oct 02, 2010
Contact name Wei-Lun Hwang
Organization name National Yang Ming Chiao Tung University
Department Department of Biotechnology and Laboratory Science in Medicine
Lab WLH LAB
Street address No.155, Sec.2, Linong Street
City Taipei
ZIP/Postal code 11221
Country Taiwan
 
Platform ID GPL570
Series (1)
GSE19471 Gene epression profile in human BM-MSC

Data table header descriptions
ID_REF
VALUE expression value

Data table
ID_REF VALUE
1007_s_at 8.123245746
1053_at 7.712219701
117_at 7.031954737
121_at 9.297068324
1255_g_at 4.371494669
1294_at 7.794396885
1316_at 6.206197144
1320_at 6.321003705
1405_i_at 3.725282059
1431_at 4.524157814
1438_at 7.120083941
1487_at 7.597889589
1494_f_at 6.448558535
1552256_a_at 7.318553901
1552257_a_at 8.988742693
1552258_at 6.251788979
1552261_at 6.114025817
1552263_at 6.005990678
1552264_a_at 8.488838518
1552266_at 5.302394007

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM485220.cel.gz 4.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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