|
| Status |
Public on Aug 01, 2021 |
| Title |
TT_14794_E03 |
| Sample type |
genomic |
| |
|
| Source name |
frozen tissue collected during operation
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
age: 67
tissue type: colorectal cancer tissue
height: 1.5
weight: 49
bmi: 21.7777777777778
anemia: 0
bms: 2
diarrhea: 1
fever: 0
headache: 0
hfs: 0
nausea: 1
neutropenia: 0
tcp: 2
vomiting: 2
overall: 2
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted using QIAGEN AllPrep DNA/RNA/miRNA universal kit according to standard instructions
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Cy5 and Cy3 Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium MethylationEPIC BeadChip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using iScan System using standard recommended Illumina scanner setting
|
| Data processing |
ChAMP v3.6 pipeline
|
| |
|
| Submission date |
Oct 22, 2020 |
| Last update date |
Aug 01, 2021 |
| Contact name |
Wansheng Chen |
| E-mail(s) |
[email protected]
|
| Organization name |
Changzheng Hospital, Second Military Medical University
|
| Department |
Department of Pharmacy
|
| Street address |
415 Fengyang Road
|
| City |
Shanghai |
| ZIP/Postal code |
200003 |
| Country |
China |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE159898 |
Identification of genomic methylation markers for colorectal cancer diagnosis and toxicity of capecitabine-based chemotherapy |
|
