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Sample GSM47942

Query DataSets for GSM47942

Status

Public on Jul 28, 2005

Title

PA Obese F 3 subB

Sample type

RNA

Source name

Primary cultured abdominal subcutaneous preadipocytes

Organism

Homo sapiens

Extracted molecule

total RNA

Description

Source of cells: Subcutaneous abdominal fat needle biopsies were obtained from non-diabetic Pima Indians . Preadipocytes (stromal vascular cells) were obtained from collagenase digested adipose tissue from the infranatant after fat cells (adipocytes) were allowed to float to the top. The stromal vascular cells were cultured until subconfluency and RNA extracted from the harvested cells. Array type: Affymetrix HG-U133B. Subject: Obese female (PA-OF3)
Keywords = Obesity
Keywords = inflammation
Keywords = microarray
Keywords = gene expression
Keywords = preadipocyte
Keywords = stromal-vascular cells
Keywords = adipose tissue

Submission date

Apr 08, 2005

Last update date

Jul 28, 2005

Contact name

Saraswathy Nair

E-mail(s)

[email protected]

Phone

602-200-5361

Fax

602-200-5335

Organization name

NIDDK, NIH

Department

Phoenix Epidemiology and Clinical Research Branch

Lab

Clinical Diabetes and Nutrition Section

Street address

4212 N. 16th Street

City

Phoenix

State/province

ZIP/Postal code

85016

Country

USA

Platform ID

GPL97

Series (1)

GSE2510

Expression profiling in preadipocytes in obese Pima Indians/humans

Data table header descriptions
ID_REF
VALUE	'signal' a measure of the abundance of a transcript
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE	'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
200000_s_at	10466.4	P	0.000244
200001_at	82435	P	0.001221
200002_at	133080.3	P	0.000244
200003_s_at	315661.3	P	0.000244
200004_at	127418.8	P	0.000244
200005_at	39170	P	0.000244
200006_at	115597.8	P	0.000244
200007_at	124965.6	P	0.000244
200008_s_at	24291.2	P	0.000732
200009_at	68531	P	0.000244
200010_at	195565	P	0.000244
200011_s_at	20169.9	P	0.001953
200012_x_at	247659.5	P	0.000244
200013_at	166511.2	P	0.000244
200014_s_at	21132.6	P	0.000244
200015_s_at	94706.8	P	0.000732
200016_x_at	174241.7	P	0.000244
200017_at	267036.1	P	0.000244
200018_at	247958	P	0.000244
200019_s_at	107952.9	P	0.000244

Total number of rows: 22645

Table truncated, full table size 608 Kbytes.

Supplementary data files not provided