GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM47939

Query DataSets for GSM47939

Status

Public on Jul 28, 2005

Title

PA Lean M 7 subB

Sample type

RNA

Source name

Primary cultured abdominal subcutaneous preadipocytes

Organism

Homo sapiens

Extracted molecule

total RNA

Description

Source of cells: Subcutaneous abdominal fat needle biopsies were obtained from non-diabetic Pima Indians . Preadipocytes (stromal vascular cells) were obtained from collagenase digested adipose tissue from the infranatant after fat cells (adipocytes) were allowed to float to the top. The stromal vascular cells were cultured until subconfluency and RNA extracted from the harvested cells. The array type used: Affymetrix HG-U133B. Subject: Lean male (PA-LM7)
Keywords = Obesity
Keywords = inflammation
Keywords = microarray
Keywords = gene expression
Keywords = preadipocyte
Keywords = stromal-vascular cells
Keywords = adipose tissue

Submission date

Apr 08, 2005

Last update date

Jul 28, 2005

Contact name

Saraswathy Nair

E-mail(s)

[email protected]

Phone

602-200-5361

Fax

602-200-5335

Organization name

NIDDK, NIH

Department

Phoenix Epidemiology and Clinical Research Branch

Lab

Clinical Diabetes and Nutrition Section

Street address

4212 N. 16th Street

City

Phoenix

State/province

ZIP/Postal code

85016

Country

USA

Platform ID

GPL97

Series (1)

GSE2510

Expression profiling in preadipocytes in obese Pima Indians/humans

Data table header descriptions
ID_REF
VALUE	'signal' a measure of the abundance of a transcript
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE	'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
200000_s_at	9378	P	0.000244
200001_at	73839.9	P	0.000732
200002_at	83438.5	P	0.000244
200003_s_at	183465.3	P	0.000244
200004_at	106806.2	P	0.000244
200005_at	33587.5	P	0.000244
200006_at	96224.1	P	0.000244
200007_at	99060.4	P	0.000244
200008_s_at	28679.2	P	0.001221
200009_at	55219.8	P	0.000244
200010_at	107050.1	P	0.000244
200011_s_at	18130.4	P	0.005859
200012_x_at	138595.9	P	0.000244
200013_at	129832.7	P	0.000244
200014_s_at	23761	P	0.000244
200015_s_at	78219.1	P	0.000244
200016_x_at	148912.7	P	0.000244
200017_at	172448	P	0.000244
200018_at	164709.3	P	0.000244
200019_s_at	80016.4	P	0.000244

Total number of rows: 22645

Table truncated, full table size 609 Kbytes.

Supplementary data files not provided