|
| Status |
Public on Dec 16, 2009 |
| Title |
BRCA1 Breast tumor 60034 RNA |
| Sample type |
RNA |
| |
|
| Source name |
familial breast tumour with >50% tumour cells, kConFab (Kathleen Cuningham Foundation Consortium for research into Familial Breast cancer)
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Breast Tumour
mutation status: BRCA1
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol, but slides were scaned at factor of 2
|
| Description |
no additional information
|
| Data processing |
The data were normalised using quantile normalisation
|
| |
|
| Submission date |
Nov 25, 2009 |
| Last update date |
Jul 15, 2010 |
| Contact name |
Nic Waddell |
| Organization name |
Queensland Centre for Medical Genomics
|
| Street address |
St Lucia
|
| City |
Brisbane |
| ZIP/Postal code |
4072 |
| Country |
Australia |
| |
|
| Platform ID |
GPL6106 |
| Series (1) |
| GSE19177 |
Subtypes of familial breast tumors revealed by expression and copy number profiling |
|
