NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM467427 Query DataSets for GSM467427
Status Public on Mar 01, 2010
Title RT_800_13_90_PGBE-800_Liver_07008
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Liver, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade, Harvest Time Point: 13, Units of Harvest Time Point: weeks
Organism Mus musculus
Characteristics amount to core: 50
units of amount: ul
od260: 14.426
od280: 7.459
ratio: 1.92
dilution: 1:10
rna integrity number: 9.1
bioanalyzer results: Good
sample preservation: RNA later
strain or line: B6C3F1
individual: 90
developmental state: Adult
sacrifice method: Pentobarbital (5.2 mg/kg) and exsanguination
gender: Female
age: 18
units of age: weeks
in vivo treatment: Propylene glycol mono-t-butyl ether
treatment repeat: 6
units of treatment repeat: hr/day
treatment duration: 13
units of duration: weeks
treatment time: 5
units of treatment time: days/wk
vehicle for chemical: Air
route of exposure: Inhalation
dose or concentration: 800
units of dose or concentration: ppm
Biomaterial provider R. Thomas, The Hamner Institutes for Health Sciences, 6 Davis Dr, RTP, NC, 27709, R. Thomas, [email protected], 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: Propylene glycol mono-t-butyl ether, Treatment Repeat: 6, Units of Treatment Repeat: hr/day, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 5, Units of Treatment Time: days/wk, Vehicle for Chemical: Air, Route of Exposure: Inhalation, Dose or Concentration: 800, Units of Dose or Concentration: ppm
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description RT_800_13_90_PGBE-800_Liver_07008_Mouse430_2_RSTLRI000_2
Data processing Affymetrix GCOS 1.0
 
Submission date Nov 03, 2009
Last update date Nov 18, 2009
Contact name Russell Scott Thomas
E-mail(s) [email protected]
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE18858 Transcriptional Biomarkers to Predict Female Mouse Liver Tumors in Rodent Cancer Bioassays - A 26 Chemical Set

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 896.06 P 0.000389797
AFFX-BioB-M_at 1631.62 P 4.42873e-05
AFFX-BioB-3_at 1049.83 P 5.16732e-05
AFFX-BioC-5_at 2860.21 P 6.02111e-05
AFFX-BioC-3_at 3582.45 P 4.42873e-05
AFFX-BioDn-5_at 5728.32 P 4.42873e-05
AFFX-BioDn-3_at 9827 P 5.16732e-05
AFFX-CreX-5_at 31532.1 P 5.16732e-05
AFFX-CreX-3_at 36681.4 P 4.42873e-05
AFFX-DapX-5_at 4032.14 P 4.42873e-05
AFFX-DapX-M_at 8119.75 P 9.4506e-05
AFFX-DapX-3_at 12326.4 P 4.42873e-05
AFFX-LysX-5_at 656.722 P 4.42873e-05
AFFX-LysX-M_at 955.597 P 7.00668e-05
AFFX-LysX-3_at 2192.2 P 5.16732e-05
AFFX-PheX-5_at 694.499 P 4.42873e-05
AFFX-PheX-M_at 1049.45 P 4.42873e-05
AFFX-PheX-3_at 1295.53 P 0.000296708
AFFX-ThrX-5_at 1002.41 P 6.02111e-05
AFFX-ThrX-M_at 1419.93 P 4.42873e-05

Total number of rows: 45101

Table truncated, full table size 1369 Kbytes.




Supplementary file Size Download File type/resource
GSM467427.CEL.gz 3.7 Mb (ftp)(http) CEL
GSM467427.CHP.gz 244.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap