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Sample GSM467418 Query DataSets for GSM467418
Status Public on Mar 01, 2010
Title RT_62_13_57_DBET_Mus_Li
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Liver, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade, Harvest Time Point: 13, Units of Harvest Time Point: weeks
Organism Mus musculus
Characteristics amount to core: 15
units of amount: ul
od260: 10.729
od280: 5.507
ratio: 1.92
dilution: 1:10
rna integrity number: 7.5
bioanalyzer results: Good
sample preservation: RNA later
strain or line: B6C3F1
individual: 57
developmental state: Adult
sacrifice method: Pentobarbital (5.2 mg/kg) and exsanguination
gender: Female
age: 18
units of age: weeks
in vivo treatment: 1,2-Dibromoethane
treatment repeat: 1
units of treatment repeat: per day
treatment duration: 13
units of duration: weeks
treatment time: 5
units of treatment time: days/wk
vehicle for chemical: Corn Oil
amount of vehicle: 5
route of exposure: Gavage
units of amount of vehicle: ml/kg
dose or concentration: 62
units of dose or concentration: mg/kg
Biomaterial provider R. Thomas, The Hamner Institutes for Health Sciences, 6 Davis Dr, RTP, NC, 27709, R. Thomas, [email protected], 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: 1,2-Dibromoethane, Treatment Repeat: 1, Units of Treatment Repeat: per day, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 5, Units of Treatment Time: days/wk, Vehicle for Chemical: Corn Oil, Amount of Vehicle: 5, Route of Exposure: Gavage, Units of Amount of Vehicle: ml/kg, Dose or Concentration: 62, Units of Dose or Concentration: mg/kg
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description RT_62_13_57_DBET_Mus_Li_Mouse430_2_RSTLRI601_1
Data processing Affymetrix GCOS 1.0
 
Submission date Nov 03, 2009
Last update date Nov 18, 2009
Contact name Russell Scott Thomas
E-mail(s) [email protected]
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE18858 Transcriptional Biomarkers to Predict Female Mouse Liver Tumors in Rodent Cancer Bioassays - A 26 Chemical Set

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 771.391 P 0.000340305
AFFX-BioB-M_at 1724.5 P 7.00668e-05
AFFX-BioB-3_at 938.002 P 5.16732e-05
AFFX-BioC-5_at 924.067 P 0.000146581
AFFX-BioC-3_at 1015.31 P 0.00010954
AFFX-BioDn-5_at 6720.12 P 4.42873e-05
AFFX-BioDn-3_at 10061.7 P 4.42873e-05
AFFX-CreX-5_at 34467.6 P 5.16732e-05
AFFX-CreX-3_at 43012.8 P 4.42873e-05
AFFX-DapX-5_at 540.072 P 7.00668e-05
AFFX-DapX-M_at 1318.99 P 0.000509415
AFFX-DapX-3_at 1978.37 P 4.42873e-05
AFFX-LysX-5_at 114.052 P 0.0012475
AFFX-LysX-M_at 193.624 P 0.00556451
AFFX-LysX-3_at 381.247 P 0.000109401
AFFX-PheX-5_at 100.717 P 0.002867
AFFX-PheX-M_at 153.734 P 0.000856509
AFFX-PheX-3_at 280.11 P 0.0044838
AFFX-ThrX-5_at 192.276 P 0.000581214
AFFX-ThrX-M_at 327.375 P 0.000389797

Total number of rows: 45101

Table truncated, full table size 1374 Kbytes.




Supplementary file Size Download File type/resource
GSM467418.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM467418.CHP.gz 5.2 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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