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Sample GSM467407 Query DataSets for GSM467407
Status Public on Mar 01, 2010
Title RT_60_13_161_TCPN-60_Liver_07008
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Liver, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade, Harvest Time Point: 13, Units of Harvest Time Point: weeks
Organism Mus musculus
Characteristics amount to core: 50
units of amount: ul
od260: 15.912
od280: 8.08
ratio: 1.94
dilution: 1:10
rna integrity number: 8.9
bioanalyzer results: Good
sample preservation: RNA later
strain or line: B6C3F1
individual: 161
developmental state: Adult
sacrifice method: Pentobarbital (5.2 mg/kg) and exsanguination
gender: Female
age: 18
units of age: weeks
in vivo treatment: 1,2,3-Trichloropropane
treatment repeat: 1
units of treatment repeat: per day
treatment duration: 13
units of duration: weeks
treatment time: 5
units of treatment time: days/wk
vehicle for chemical: Corn Oil
amount of vehicle: 5
route of exposure: Gavage
units of amount of vehicle: ml/kg
dose or concentration: 60
units of dose or concentration: mg/kg
Biomaterial provider R. Thomas, The Hamner Institutes for Health Sciences, 6 Davis Dr, RTP, NC, 27709, R. Thomas, [email protected], 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: 1,2,3-Trichloropropane, Treatment Repeat: 1, Units of Treatment Repeat: per day, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 5, Units of Treatment Time: days/wk, Vehicle for Chemical: Corn Oil, Amount of Vehicle: 5, Route of Exposure: Gavage, Units of Amount of Vehicle: ml/kg, Dose or Concentration: 60, Units of Dose or Concentration: mg/kg
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description RT_60_13_161_TCPN-60_Liver_07008_Mouse430_2_RSTLRI000_2
Data processing Affymetrix GCOS 1.0
 
Submission date Nov 03, 2009
Last update date Nov 18, 2009
Contact name Russell Scott Thomas
E-mail(s) [email protected]
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE18858 Transcriptional Biomarkers to Predict Female Mouse Liver Tumors in Rodent Cancer Bioassays - A 26 Chemical Set

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 783.346 P 0.000581214
AFFX-BioB-M_at 1587.28 P 4.42873e-05
AFFX-BioB-3_at 861.912 P 5.16732e-05
AFFX-BioC-5_at 2714.73 P 5.16732e-05
AFFX-BioC-3_at 3417.01 P 4.42873e-05
AFFX-BioDn-5_at 5662.33 P 4.42873e-05
AFFX-BioDn-3_at 9031.41 P 5.16732e-05
AFFX-CreX-5_at 26007.6 P 5.16732e-05
AFFX-CreX-3_at 30498.3 P 4.42873e-05
AFFX-DapX-5_at 2652.63 P 4.42873e-05
AFFX-DapX-M_at 5493.21 P 9.4506e-05
AFFX-DapX-3_at 7035.07 P 4.42873e-05
AFFX-LysX-5_at 404.546 P 4.42873e-05
AFFX-LysX-M_at 610.489 P 0.000126798
AFFX-LysX-3_at 1139.86 P 4.42873e-05
AFFX-PheX-5_at 399.019 P 4.42873e-05
AFFX-PheX-M_at 722.432 P 6.02111e-05
AFFX-PheX-3_at 756.403 P 0.000753643
AFFX-ThrX-5_at 515.283 P 6.02111e-05
AFFX-ThrX-M_at 884.383 P 5.16732e-05

Total number of rows: 45101

Table truncated, full table size 1373 Kbytes.




Supplementary file Size Download File type/resource
GSM467407.CEL.gz 3.7 Mb (ftp)(http) CEL
GSM467407.CHP.gz 245.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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