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Sample GSM467328 Query DataSets for GSM467328
Status Public on Mar 01, 2010
Title RT_2000_13_20_Liver_PCnB
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Liver, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade, Harvest Time Point: 13, Units of Harvest Time Point: weeks
Organism Mus musculus
Characteristics amount to core: 10
units of amount: ug
od260: 2.105
od280: 1.097
ratio: 1.93
dilution: 10
rna integrity number: 8.4
bioanalyzer results: Good
sample preservation: RNA later
strain or line: B6C3F1
individual: 20
developmental state: Adult
sacrifice method: Pentobarbital (5.2 mg/kg) and exsanguination
gender: Female
age: 18
units of age: weeks
in vivo treatment: Pentachloronitrobenzene
treatment duration: 13
units of duration: week
treatment time: 7
units of treatment time: days/wk
vehicle for chemical: Rodent Chow
route of exposure: Diet
dose or concentration: 8187
units of dose or concentration: ppm
Biomaterial provider R. Thomas, The Hamner Institutes for Health Sciences, 6 Davis Dr, RTP, NC, 27709, R. Thomas, [email protected], 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: Pentachloronitrobenzene, Treatment Duration: 13, Units of Duration: week, Treatment Time: 7, Units of Treatment Time: days/wk, Vehicle for Chemical: Rodent Chow, Route of Exposure: Diet, Dose or Concentration: 8187, Units of Dose or Concentration: ppm
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description RT_2000_13_20_Liver_PCnB_Mouse430_2_IMFGN0023_8
Data processing Affymetrix GCOS 1.0
 
Submission date Nov 03, 2009
Last update date Nov 18, 2009
Contact name Russell Scott Thomas
E-mail(s) [email protected]
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE18858 Transcriptional Biomarkers to Predict Female Mouse Liver Tumors in Rodent Cancer Bioassays - A 26 Chemical Set

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 784.875 P 0.000195116
AFFX-BioB-M_at 1505.36 P 0.00010954
AFFX-BioB-3_at 808.355 P 6.02111e-05
AFFX-BioC-5_at 2783.77 P 4.42873e-05
AFFX-BioC-3_at 2777.69 P 4.42873e-05
AFFX-BioDn-5_at 5378.74 P 4.42873e-05
AFFX-BioDn-3_at 11643 P 4.42873e-05
AFFX-CreX-5_at 27080.3 P 5.16732e-05
AFFX-CreX-3_at 39435.7 P 4.42873e-05
AFFX-DapX-5_at 3014.28 P 4.42873e-05
AFFX-DapX-M_at 4454.72 P 8.14279e-05
AFFX-DapX-3_at 5908.15 P 4.42873e-05
AFFX-LysX-5_at 312.341 P 0.000340305
AFFX-LysX-M_at 397.575 P 0.000146581
AFFX-LysX-3_at 836.978 P 4.42873e-05
AFFX-PheX-5_at 371.211 P 7.00668e-05
AFFX-PheX-M_at 477.343 P 5.16732e-05
AFFX-PheX-3_at 752.35 P 0.000753643
AFFX-ThrX-5_at 726.053 P 5.16732e-05
AFFX-ThrX-M_at 1026.85 P 5.16732e-05

Total number of rows: 45101

Table truncated, full table size 1373 Kbytes.




Supplementary file Size Download File type/resource
GSM467328.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM467328.CHP.gz 5.2 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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