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Sample GSM467327 Query DataSets for GSM467327
Status Public on Mar 01, 2010
Title RT_2000_13_2_Liver_Naphth
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Liver, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade, Harvest Time Point: 13, Units of Harvest Time Point: weeks
Organism Mus musculus
Characteristics amount to core: 10
units of amount: ug
od260: 8.964
od280: 4.63
ratio: 1.94
dilution: 10
rna integrity number: 8.8
bioanalyzer results: Good
sample preservation: RNA later
strain or line: B6C3F1
developmental state: Adult
sacrifice method: Pentobarbital (5.2 mg/kg) and exsanguination
gender: Female
age: 18
units of age: weeks
in vivo treatment: 1,5-Naphthalenediamine
treatment duration: 13
units of duration: weeks
treatment time: 7
units of treatment time: days/wk
vehicle for chemical: Rodent Chow
route of exposure: Diet
dose or concentration: 2000
units of dose or concentration: ppm
Biomaterial provider R. Thomas, The Hamner Institutes for Health Sciences, 6 Davis Dr, RTP, NC, 27709, R. Thomas, [email protected], 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: 1,5-Naphthalenediamine, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 7, Units of Treatment Time: days/wk, Vehicle for Chemical: Rodent Chow, Route of Exposure: Diet, Dose or Concentration: 2000, Units of Dose or Concentration: ppm
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description RT_2000_13_2_Liver_Naphth_Mouse430_2_IMFGN0023_8
Data processing Affymetrix GCOS 1.0
 
Submission date Nov 03, 2009
Last update date Nov 18, 2009
Contact name Russell Scott Thomas
E-mail(s) [email protected]
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE18858 Transcriptional Biomarkers to Predict Female Mouse Liver Tumors in Rodent Cancer Bioassays - A 26 Chemical Set

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 735.372 P 0.000195116
AFFX-BioB-M_at 1507.63 P 5.16732e-05
AFFX-BioB-3_at 827.062 P 5.16732e-05
AFFX-BioC-5_at 2841.07 P 5.16732e-05
AFFX-BioC-3_at 2995.8 P 4.42873e-05
AFFX-BioDn-5_at 5670.54 P 4.42873e-05
AFFX-BioDn-3_at 11176.5 P 4.42873e-05
AFFX-CreX-5_at 25315.3 P 5.16732e-05
AFFX-CreX-3_at 36009.8 P 4.42873e-05
AFFX-DapX-5_at 7.01988 A 0.645559
AFFX-DapX-M_at 10.6655 A 0.631562
AFFX-DapX-3_at 29.5477 A 0.514891
AFFX-LysX-5_at 18.1581 A 0.470241
AFFX-LysX-M_at 33.1125 A 0.544587
AFFX-LysX-3_at 50.7264 A 0.165861
AFFX-PheX-5_at 12.2411 A 0.470241
AFFX-PheX-M_at 5.54337 A 0.921998
AFFX-PheX-3_at 13.2932 A 0.672921
AFFX-ThrX-5_at 29.6412 A 0.425956
AFFX-ThrX-M_at 12.348 A 0.617401

Total number of rows: 45101

Table truncated, full table size 1376 Kbytes.




Supplementary file Size Download File type/resource
GSM467327.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM467327.CHP.gz 5.2 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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