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Sample GSM467279 Query DataSets for GSM467279
Status Public on Mar 01, 2010
Title RT_1250_13_1r_BBMP_Mus_Li
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Liver, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade, Harvest Time Point: 13, Units of Harvest Time Point: weeks
Organism Mus musculus
Characteristics amount to core: 15
units of amount: ul
od260: 11.876
od280: 6.208
ratio: 1.89
dilution: 1:10
bioanalyzer results: Good
sample preservation: RNA later
strain or line: B6C3F1
developmental state: Adult
sacrifice method: Pentobarbital (5.2 mg/kg) and exsanguination
gender: Female
age: 18
units of age: weeks
in vivo treatment: 2,2-Bis(bromomethyl)-1,3-propanediol
treatment duration: 13
units of duration: weeks
treatment time: 7
units of treatment time: days/wk
vehicle for chemical: Rodent Chow
route of exposure: Diet
dose or concentration: 1250
units of dose or concentration: ppm
Biomaterial provider R. Thomas, The Hamner Institutes for Health Sciences, 6 Davis Dr, RTP, NC, 27709, R. Thomas, [email protected], 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: 2,2-Bis(bromomethyl)-1,3-propanediol, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 7, Units of Treatment Time: days/wk, Vehicle for Chemical: Rodent Chow, Route of Exposure: Diet, Dose or Concentration: 1250, Units of Dose or Concentration: ppm
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description RT_1250_13_1r_BBMP_Mus_Li_Mouse430_2_RSTLRI601_1
Data processing Affymetrix GCOS 1.0
 
Submission date Nov 03, 2009
Last update date Nov 18, 2009
Contact name Russell Scott Thomas
E-mail(s) [email protected]
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE18858 Transcriptional Biomarkers to Predict Female Mouse Liver Tumors in Rodent Cancer Bioassays - A 26 Chemical Set

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 746.89 P 0.000509415
AFFX-BioB-M_at 1940.4 P 4.42873e-05
AFFX-BioB-3_at 1012.16 P 5.16732e-05
AFFX-BioC-5_at 1077.32 P 9.4506e-05
AFFX-BioC-3_at 1180.78 P 4.42873e-05
AFFX-BioDn-5_at 7245.82 P 4.42873e-05
AFFX-BioDn-3_at 10961.3 P 4.42873e-05
AFFX-CreX-5_at 32162.1 P 5.16732e-05
AFFX-CreX-3_at 41217.1 P 4.42873e-05
AFFX-DapX-5_at 955.483 P 6.02111e-05
AFFX-DapX-M_at 1811.57 P 0.000224668
AFFX-DapX-3_at 2815.57 P 5.16732e-05
AFFX-LysX-5_at 130.489 P 0.000340305
AFFX-LysX-M_at 275.144 P 0.000296381
AFFX-LysX-3_at 437.748 P 0.000126798
AFFX-PheX-5_at 173.297 P 5.16732e-05
AFFX-PheX-M_at 318.175 P 0.000169227
AFFX-PheX-3_at 362.874 P 0.000972149
AFFX-ThrX-5_at 188.813 P 0.00141043
AFFX-ThrX-M_at 346.434 P 0.000126798

Total number of rows: 45101

Table truncated, full table size 1375 Kbytes.




Supplementary file Size Download File type/resource
GSM467279.CEL.gz 3.6 Mb (ftp)(http) CEL
GSM467279.CHP.gz 5.2 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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