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Sample GSM467272 Query DataSets for GSM467272
Status Public on Mar 01, 2010
Title RT_10000_13_14_NAAC_Mus_Li
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Liver, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade, Harvest Time Point: 13, Units of Harvest Time Point: weeks
Organism Mus musculus
Characteristics amount to core: 15
units of amount: ul
od260: 9.355
od280: 4.807
ratio: 1.94
dilution: 1:10
rna integrity number: 6.9
bioanalyzer results: Good
sample preservation: RNA later
strain or line: B6C3F1
individual: 14
developmental state: Adult
sacrifice method: Pentobarbital (5.2 mg/kg) and exsanguination
gender: Female
age: 18
units of age: weeks
in vivo treatment: 4-Nitroanthranilic acid
treatment duration: 13
units of duration: weeks
treatment time: 7
units of treatment time: days/wk
vehicle for chemical: Rodent Chow
route of exposure: Diet
dose or concentration: 10000
units of dose or concentration: ppm
Biomaterial provider R. Thomas, The Hamner Institutes for Health Sciences, 6 Davis Dr, RTP, NC, 27709, R. Thomas, [email protected], 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: 4-Nitroanthranilic acid, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 7, Units of Treatment Time: days/wk, Vehicle for Chemical: Rodent Chow, Route of Exposure: Diet, Dose or Concentration: 10000, Units of Dose or Concentration: ppm
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description RT_10000_13_14_NAAC_Mus_Li_Mouse430_2_RSTLRI601_1
Data processing Affymetrix GCOS 1.0
 
Submission date Nov 03, 2009
Last update date Nov 18, 2009
Contact name Russell Scott Thomas
E-mail(s) [email protected]
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE18858 Transcriptional Biomarkers to Predict Female Mouse Liver Tumors in Rodent Cancer Bioassays - A 26 Chemical Set

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1143.18 P 0.000662269
AFFX-BioB-M_at 2238.62 P 4.42873e-05
AFFX-BioB-3_at 1515.66 P 4.42873e-05
AFFX-BioC-5_at 1486.41 P 9.4506e-05
AFFX-BioC-3_at 1480.21 P 5.16732e-05
AFFX-BioDn-5_at 11316.8 P 4.42873e-05
AFFX-BioDn-3_at 16110.4 P 4.42873e-05
AFFX-CreX-5_at 51805.2 P 5.16732e-05
AFFX-CreX-3_at 58102 P 4.42873e-05
AFFX-DapX-5_at 641.222 P 4.42873e-05
AFFX-DapX-M_at 1375.61 P 0.000753643
AFFX-DapX-3_at 2262.67 P 5.16732e-05
AFFX-LysX-5_at 117.438 P 0.000340305
AFFX-LysX-M_at 179.375 P 0.00933744
AFFX-LysX-3_at 473.415 P 0.000169227
AFFX-PheX-5_at 126.539 P 0.00556451
AFFX-PheX-M_at 184.713 P 0.00179591
AFFX-PheX-3_at 295.595 P 0.00762003
AFFX-ThrX-5_at 155.726 P 0.0103167
AFFX-ThrX-M_at 294.696 P 0.000389797

Total number of rows: 45101

Table truncated, full table size 1370 Kbytes.




Supplementary file Size Download File type/resource
GSM467272.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM467272.CHP.gz 5.1 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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