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Sample GSM467250 Query DataSets for GSM467250
Status Public on Mar 01, 2010
Title RT_10_13_264_NPTH-10_Liver_07008
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Liver, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade, Harvest Time Point: 13, Units of Harvest Time Point: weeks
Organism Mus musculus
Characteristics amount to core: 50
units of amount: ul
od260: 19.293
od280: 9.934
ratio: 1.97
dilution: 1:10
rna integrity number: 9.1
bioanalyzer results: Good
sample preservation: RNA later
strain or line: B6C3F1
individual: 264
developmental state: Adult
sacrifice method: Pentobarbital (5.2 mg/kg) and exsanguination
gender: Female
age: 18
units of age: weeks
in vivo treatment: Naphthalene
treatment repeat: 6
units of treatment repeat: hr/day
treatment duration: 13
units of duration: weeks
treatment time: 5
units of treatment time: days/wk
vehicle for chemical: Air
route of exposure: Inhalation
dose or concentration: 10
units of dose or concentration: ppm
Biomaterial provider R. Thomas, The Hamner Institutes for Health Sciences, 6 Davis Dr, RTP, NC, 27709, R. Thomas, [email protected], 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: Naphthalene, Treatment Repeat: 6, Units of Treatment Repeat: hr/day, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 5, Units of Treatment Time: days/wk, Vehicle for Chemical: Air, Route of Exposure: Inhalation, Dose or Concentration: 10, Units of Dose or Concentration: ppm
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description RT_10_13_264_NPTH-10_Liver_07008_Mouse430_2_RSTLRI000_2
Data processing Affymetrix GCOS 1.0
 
Submission date Nov 03, 2009
Last update date Nov 18, 2009
Contact name Russell Scott Thomas
E-mail(s) [email protected]
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE18858 Transcriptional Biomarkers to Predict Female Mouse Liver Tumors in Rodent Cancer Bioassays - A 26 Chemical Set

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1148.87 P 0.000126798
AFFX-BioB-M_at 2694.99 P 4.42873e-05
AFFX-BioB-3_at 1388.11 P 4.42873e-05
AFFX-BioC-5_at 3869.86 P 5.16732e-05
AFFX-BioC-3_at 4773.36 P 4.42873e-05
AFFX-BioDn-5_at 8725.08 P 4.42873e-05
AFFX-BioDn-3_at 12863 P 4.42873e-05
AFFX-CreX-5_at 40912.9 P 5.16732e-05
AFFX-CreX-3_at 49411.1 P 4.42873e-05
AFFX-DapX-5_at 3226.08 P 4.42873e-05
AFFX-DapX-M_at 6637.83 P 8.14279e-05
AFFX-DapX-3_at 9935.54 P 4.42873e-05
AFFX-LysX-5_at 465.755 P 5.16732e-05
AFFX-LysX-M_at 621.043 P 7.00668e-05
AFFX-LysX-3_at 1304.7 P 7.00668e-05
AFFX-PheX-5_at 487.823 P 7.00668e-05
AFFX-PheX-M_at 786.609 P 6.02111e-05
AFFX-PheX-3_at 795.936 P 0.000340305
AFFX-ThrX-5_at 754.851 P 0.00010954
AFFX-ThrX-M_at 995.729 P 4.42873e-05

Total number of rows: 45101

Table truncated, full table size 1369 Kbytes.




Supplementary file Size Download File type/resource
GSM467250.CEL.gz 3.3 Mb (ftp)(http) CEL
GSM467250.CHP.gz 248.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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