NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM4609846 Query DataSets for GSM4609846
Status Public on Jun 11, 2020
Title Genomic DNA from 203038250014_R01C01
Sample type genomic
 
Source name 203038250014_R01C01
Organism Homo sapiens
Characteristics cell type: Peripheral blood mononuclear cell
subject: 1
Extracted molecule genomic DNA
Extraction protocol Standard Illumina Protocol.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol.
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human EPIC BeadChip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting.
Description Sample 1
Whole blood sample
Data processing minfi
 
Submission date Jun 10, 2020
Last update date Jun 11, 2020
Contact name Ke Xu
E-mail(s) [email protected]
Phone 2038240720
Organization name Yale University
Street address P.O. Box 208234.
City New Haven
State/province CT
ZIP/Postal code 06511
Country USA
 
Platform ID GPL21145
Series (2)
GSE152245 Comparison of Methylation Capture Sequencing and Infinium EPIC Methylation Array in Peripheral Blood Mononuclear Cells [EPIC array]
GSE152923 Comparison of Methylation Capture Sequencing and Infinium EPIC Methylation Array in Peripheral Blood Mononuclear Cells

Data table header descriptions
ID_REF
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg14817997 0.878 5.40E-196
cg26928153 0.951 0
cg16269199 0.898 0
cg13869341 0.852 0
cg14008030 0.758 0
cg12045430 0.0996 0
cg20826792 0.103 0
cg20253340 0.538 0
cg02404219 0.904 0
cg21870274 0.76 0
cg03130891 0.318 1.67E-07
cg04098293 0.678 0
cg16382250 0.922 0
cg24335620 0.735 0
cg22463138 0.865 0
cg16162899 0.727 4.66E-31
cg01803908 0.882 0
cg17149495 0.871 5.29E-272
cg22802167 0.952 0
cg24669183 0.917 0

Total number of rows: 865859

Table truncated, full table size 16610 Kbytes.




Supplementary file Size Download File type/resource
GSM4609846_203038250014_R01C01_Grn.idat.gz 7.0 Mb (ftp)(http) IDAT
GSM4609846_203038250014_R01C01_Red.idat.gz 7.0 Mb (ftp)(http) IDAT
Processed data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap