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Sample GSM4557637 Query DataSets for GSM4557637
Status Public on Dec 22, 2021
Title AW307_STM271
Sample type RNA
 
Source name AW307_STM271
Organism Homo sapiens
Characteristics fibrosis stage: 0
pls risk prediction: Intermediate
Treatment protocol FFPE tissue sections (10 micron-thick) sliced from FFPE blocks
Growth protocol na
Extracted molecule total RNA
Extraction protocol RNA was isolated using High Pure RNA Paraffin kit (Roche) according to manufacturer’s protocol.
Label biotin
Label protocol Refer to the NanoString nCounter Assay System Manual
 
Hybridization protocol Refer to the NanoString nCounter Assay System Manual
Scan protocol Refer to the NanoString nCounter Assay System Manual
Data processing For each probe, transcript count data were log2 transformed and scaled by geometric mean of the normalization genes by NanoString normalizer module of GenePattern toolkit (www.broadinstitute.org/genepattern) after setting a floor value of 1.1.
 
Submission date Aug 05, 2021
Last update date Dec 22, 2021
Contact name Yujin Hoshida
Organization name University of Texas Southwestern Medical Center
Street address 5323 Harry Hines Blvd
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Platform ID GPL19886
Series (2)
GSE85550 Molecular signature predictive of long-term liver fibrosis progression to inform anti-fibrotic drug development
GSE150734 Prognostic Liver Signature profiles in biopsy tissues from non-alcoholic fatty liver disease (NAFLD) patients in the U.S.

Data table header descriptions
ID_REF
VALUE Normalized transcript abundance

Data table
ID_REF VALUE
FSHB 0.325406
SH3GL2 0.4824779
RBM34 0.6808691
NCAPH 0.3844807
EGF 0.3581328
TRIO 0.8089372
COL6A3 0.7873755
ABLIM1 0.7823643
ITGA9 0.7249806
NTS 0.4065354
SERPINB2 0.3844807
MMP7 0.5135328
PRKG2 0.2821903
EDG4 0.298174
NOS2A 0.4255017
EPHA4 0.4703171
SP100 0.837246
FMO1 0.7355928
GPX2 0.8644264
ATP4B 0.3581328

Total number of rows: 192

Table truncated, full table size 2 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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