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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 15, 2020 |
| Title |
Id3lo.Blimp1lo.TIL#1 |
| Sample type |
SRA |
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| Source name |
D14 TIL P14
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| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
age: 6-16 Weeks
tissue: Tumor
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| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted in TRIZoL reagent
PrepX RNA-seq library preperation kit (Integenex)
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
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| Data processing |
Tophat
HT-Seq Count
DESeq from BioConductor
Genome_build: UCSC mm10
Supplementary_files_format_and_content: gct
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| Submission date |
Mar 20, 2020 |
| Last update date |
Apr 15, 2020 |
| Contact name |
Ananda Goldrath |
| E-mail(s) |
[email protected]
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| Organization name |
UCSD
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| Department |
Molecular Biology
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| Lab |
Goldrath Lab
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| Street address |
9500 Gilman Dr
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| City |
San diego |
| State/province |
CA |
| ZIP/Postal code |
92093 |
| Country |
USA |
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| Platform ID |
GPL17021 |
| Series (2) |
| GSE147263 |
RNA-Seq of CD8+ T cell subsets in B16-GP33 tumor |
| GSE147502 |
Heterogeneity of tissue-resident CD8+ T cells in response to infection and malignancy |
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| Relations |
| BioSample |
SAMN14411529 |
| SRA |
SRX7958971 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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