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Sample GSM438172 Query DataSets for GSM438172
Status Public on Dec 31, 2009
Title FR-SYS21-J1
Sample type RNA
 
Source name Whole blood
Organism Homo sapiens
Characteristics age: 15
gender: female
illness: SoJIA
treatment: None
time point: Day 1
Extracted molecule total RNA
Extraction protocol Tempus RNA extraction kit and GlobinClear kit
Label biotin
Label protocol Biotinylated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridize 6-Sample Beadchip
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description SoJIA, Gender=F, Age=15
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Aug 11, 2009
Last update date Aug 17, 2009
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6106
Series (1)
GSE17590 Anakinra in Systemic-onset Juvenile Idiopathic Arthritis

Data table header descriptions
ID_REF Illumina probe set identifier
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
460484 -0.62 0.54
3520484 21.53 0
1170324 99.49 0
6250161 7.97 0.01
5490470 83.3 0
7150408 113.36 0
6130228 12.61 0
2650551 65.27 0
4180010 0.19 0.42
6980328 398.81 0
3940202 4.22 0.11
6040682 2.65 0.19
10093 1.66 0.27
610370 4891.69 0
4590068 3.69 0.13
3140612 -0.71 0.55
5890307 18133.43 0
2360114 -4.05 0.9
2480240 -0.49 0.52
6520377 2.7 0.19

Total number of rows: 48687

Table truncated, full table size 836 Kbytes.




Supplementary file Size Download File type/resource
GSM438172.txt.gz 525.7 Kb (ftp)(http) TXT
Processed data included within Sample table

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