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Status
Public on Jun 02, 2005
Title
DEHP 48hr Veh POOLED
Sample type
RNA
Source name
Liver
Organism
Rattus norvegicus Extracted molecule
total RNA
Description
Male SD rats were given a single dose of distilled water as a vehicle. Animal was sacrificed 48hrs post-dosing. Total RNA was extracted using the RNA STAT-60 kit from Tel-Test inc. Approximately 2ug of RNA from each sample was pooled (10ug total) and labeled according to the standard Affymetrix protocol. Signal values were calculated using the MAS 5.0 algorithm, with global scaling to 1500
Submission date
Feb 22, 2005
Last update date
Jun 02, 2005
Contact name
Keith M Goldstein
E-mail(s)
[email protected] Organization name
Eli Lilly & Co.
Department
Investigative Toxicology
Lab
Keith Goldstein
Street address
Lilly Corporate Center
City
Indianapolis
State/province
IN
ZIP/Postal code
46285
Country
USA
Platform ID
GPL85 Series (1)
GSE2303 Rat liver response to Clofibrate, DEHP or VPA
Data table header descriptions ID_REF Affymetrix probeset ID
VALUE Signal from MAS5 with global scaling to 1500
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
39.6
A
0.891021
AFFX-MurIL10_at
50.5
A
0.60308
AFFX-MurIL4_at
31
A
0.824672
AFFX-MurFAS_at
116.7
A
0.617401
AFFX-BioB-5_at
625.9
A
0.083592
AFFX-BioB-M_at
1604.8
P
0.000509
AFFX-BioB-3_at
904.5
P
0.006871
AFFX-BioC-5_at
3108.2
P
0.00039
AFFX-BioC-3_at
1925.4
P
0.000297
AFFX-BioDn-5_at
2517.9
P
0.001796
AFFX-BioDn-3_at
18543.3
P
0.000147
AFFX-CreX-5_at
35854.2
P
0.000044
AFFX-CreX-3_at
53745.4
P
0.000044
AFFX-BioB-5_st
398
A
0.239063
AFFX-BioB-M_st
494.3
A
0.340661
AFFX-BioB-3_st
116.9
A
0.904333
AFFX-BioC-5_st
109.9
A
0.910522
AFFX-BioC-3_st
24.7
A
0.953518
AFFX-BioDn-5_st
887.5
A
0.139482
AFFX-BioDn-3_st
494.4
M
0.058444
8799 258 Kbytes .Supplementary file Size Download File type/resource GSM42895.CEL.gz
2.0 Mb
(ftp) (http) CEL
GSM42895.CHP.gz
3.0 Mb
(ftp) (http) CHP
GSM42895.EXP.gz
388 b
(ftp) (http) EXP
Processed data provided as supplementary file
