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Status
Public on Jun 02, 2005
Title
Clof 168hr treated POOLED
Sample type
RNA
Source name
Liver
Organism
Rattus norvegicus Extracted molecule
total RNA
Description
Male SD rats were given a single dose of 1000mg/kg clofibrate using 0.9% saline as vehicle. Animal was sacrificed 168hrs post-dosing. Total RNA was extracted using the RNA STAT-60 kit from Tel-Test inc. Approximately 2ug of RNA from each sample was pooled (10ug total) and labeled according to the standard Affymetrix protocol. Signal values were calculated using the MAS 5.0 algorithm, with global scaling to 1500.
Submission date
Feb 21, 2005
Last update date
Jun 02, 2005
Contact name
Keith M Goldstein
E-mail(s)
[email protected] Organization name
Eli Lilly & Co.
Department
Investigative Toxicology
Lab
Keith Goldstein
Street address
Lilly Corporate Center
City
Indianapolis
State/province
IN
ZIP/Postal code
46285
Country
USA
Platform ID
GPL85 Series (1)
GSE2303 Rat liver response to Clofibrate, DEHP or VPA
Data table header descriptions ID_REF Affymetrix probeset ID
VALUE Signal from MAS5 with global scaling to 1500
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
33.2
A
0.883887
AFFX-MurIL10_at
45.8
A
0.672921
AFFX-MurIL4_at
4.1
A
0.978098
AFFX-MurFAS_at
57.5
A
0.544587
AFFX-BioB-5_at
1245.2
P
0.011384
AFFX-BioB-M_at
2906.1
P
0.00006
AFFX-BioB-3_at
1253.8
P
0.001102
AFFX-BioC-5_at
4299.7
P
0.000081
AFFX-BioC-3_at
2760.1
P
0.000052
AFFX-BioDn-5_at
3765.7
P
0.000972
AFFX-BioDn-3_at
19832.6
P
0.000081
AFFX-CreX-5_at
34939.1
P
0.000044
AFFX-CreX-3_at
57675
P
0.000044
AFFX-BioB-5_st
287.5
A
0.205732
AFFX-BioB-M_st
280.5
A
0.41138
AFFX-BioB-3_st
60.5
A
0.860518
AFFX-BioC-5_st
81.5
A
0.824672
AFFX-BioC-3_st
21.8
A
0.897835
AFFX-BioDn-5_st
380.3
A
0.175328
AFFX-BioDn-3_st
538.9
A
0.123572
8799 257 Kbytes .Supplementary file Size Download File type/resource GSM42883.CEL.gz
1.7 Mb
(ftp) (http) CEL
GSM42883.CHP.gz
2.7 Mb
(ftp) (http) CHP
GSM42883.EXP.gz
498 b
(ftp) (http) EXP
Processed data provided as supplementary file
