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Sample GSM41932 Query DataSets for GSM41932
Status Public on Feb 10, 2006
Title F72A/R73A_24h:Blank_24h - mAdb ID 51545
Sample type RNA
 
Channel 1
Source name Blank_24h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name F72A/R73A_24h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 51545
Flp-In TREx 293 cells stably transfected with F72A/R73A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 24 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.2p19-110403
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 24
SAMPLE: F72A/R73A_24h:Blank_24h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) [email protected]
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.307 0.808 1 1 1 704 243 133 78 889 265 199 81 0 -0.307
1174364_1 0.156 1.114 1 1 2 6570 1622 145 2054 5833 1478 202 3253 0 0.156
1175152_1 -0.414 0.750 1 1 3 758 399 141 2157 1007 435 204 3416 0 -0.414
1175940_1 -0.087 0.942 1 1 4 2667 823 131 76 2832 805 202 77 0 -0.087
1176716_1 -0.175 0.886 1 1 5 6634 2023 142 104 7350 1642 192 78 0 -0.175
1177504_1 0.239 1.180 1 1 6 5864 1834 132 106 4938 1187 196 74 0 0.239
1178580_1 -0.016 0.989 1 1 7 4760 1725 126 70 4781 1749 206 73 0 -0.016
1179356_1 -0.125 0.917 1 1 8 360 192 128 76 451 190 204 77 0 -0.125
1180144_1 -0.076 0.949 1 1 9 8382 2696 140 79 8683 2440 200 76 0 -0.076
1180932_1 0.117 1.084 1 1 10 545 309 133 77 568 265 197 75 0 0.117
1181708_1 0.076 1.054 1 1 11 1641 575 127 81 1597 780 194 73 0 0.076
1182496_1 -0.064 0.957 1 1 12 461 258 126 77 525 207 183 69 0 -0.064
1183572_1 0.357 1.280 1 1 13 1609 570 126 73 1322 429 191 71 0 0.357
1184348_1 0.105 1.076 1 1 14 802 389 129 76 806 330 195 66 0 0.105
1185136_1 1.166 1 1 15 172 109 129 82 225 99 189 73 -50 0.222
1185924_1 -0.276 0.826 1 1 16 325 154 133 83 421 179 194 74 0 -0.276
1186700_1 0.213 1.159 1 1 17 3592 1127 142 73 3100 888 194 71 0 0.213
1187488_1 -0.078 0.948 1 1 18 1248 463 133 73 1346 486 197 78 0 -0.078
1188564_1 -0.014 0.991 1 1 19 10240 2861 134 70 10152 2882 190 71 0 -0.014
1189340_1 -0.207 0.866 1 1 20 848 456 134 78 996 514 191 63 0 -0.207

Total number of rows: 21794

Table truncated, full table size 1502 Kbytes.




Supplementary data files not provided
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