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Sample GSM412185 Query DataSets for GSM412185
Status Public on Apr 12, 2010
Title xpa-1_2
Sample type RNA
 
Source name xpa-1 mutant
Organism Caenorhabditis elegans
Characteristics strain: xpa-1 mutant
Extracted molecule total RNA
Extraction protocol TRIZOL following RNA extraction with chloroform and isopropanol
Label biotin
Label protocol GeneChip eukaryotic target labeling kit
 
Hybridization protocol hybridization protocol recommended by Affymetrix
Scan protocol scanning protocol recommended by Affymetrix
Description xpa-2
Data processing dChip was used for the processing of the data. The invariant set normalization method was used.
 
Submission date Jun 03, 2009
Last update date Nov 30, 2009
Contact name Jessica Margareta Lindvall
E-mail(s) [email protected]
Organization name University of Oslo
Street address Gaustadallee 24
City Oslo
ZIP/Postal code 0176
Country Norway
 
Platform ID GPL200
Series (1)
GSE16405 Transcriptional changes in the absence of nth-1, xpa-1 and nth-1;xpa-1

Data table header descriptions
ID_REF
VALUE log-2 normalized signal (dChip)
ABS_CALL

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 7.84 P
AFFX-BioB-M_at 8.4 P
AFFX-BioB-3_at 8.13 P
AFFX-BioC-5_at 7.5 P
AFFX-BioC-3_at 8.57 P
AFFX-BioDn-5_at 10.02 P
AFFX-BioDn-3_at 11.95 P
AFFX-CreX-5_at 12.6 P
AFFX-CreX-3_at 12.75 P
AFFX-DapX-5_at 6.95 P
AFFX-DapX-M_at 9.26 P
AFFX-DapX-3_at 9.88 P
AFFX-LysX-5_at 4.92 A
AFFX-LysX-M_at 6.87 A
AFFX-LysX-3_at 8.11 P
AFFX-PheX-5_at 4.91 A
AFFX-PheX-M_at 6.47 A
AFFX-PheX-3_at 8.06 P
AFFX-ThrX-5_at 6.68 A
AFFX-ThrX-M_at 7.18 P

Total number of rows: 22625

Table truncated, full table size 391 Kbytes.




Supplementary file Size Download File type/resource
GSM412185.CEL.gz 2.3 Mb (ftp)(http) CEL
GSM412185.CHP.gz 121.7 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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